IL_5VPP_080

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

5VPP|1|RA|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_080 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.0713

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

5VPP|1|RA|C|697
5VPP|1|RA|C|698
*
5VPP|1|RA|G|763
5VPP|1|RA|A|764
5VPP|1|RA|G|765

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2