IL_5VPP_087
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGAC*GGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_087 not in the Motif Atlas
- Geometric match to IL_7RQB_026
- Geometric discrepancy: 0.2461
- The information below is about IL_7RQB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_94165.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5VPP|1|RA|C|846
5VPP|1|RA|U|847
5VPP|1|RA|G|848
5VPP|1|RA|A|849
5VPP|1|RA|C|850
*
5VPP|1|RA|G|928
5VPP|1|RA|G|929
5VPP|1|RA|U|930
5VPP|1|RA|G|931
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R3
- 50S ribosomal protein L30
Coloring options: