IL_5VPP_102

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5VPP|1|RA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_102 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1342

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5VPP|1|RA|G|1031
5VPP|1|RA|A|1032
5VPP|1|RA|U|1033
5VPP|1|RA|G|1034
*
5VPP|1|RA|C|1121
5VPP|1|RA|G|1122
5VPP|1|RA|C|1123

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RQ

50S ribosomal protein L16