IL_5VPP_103

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCGAAGACAG*UCGAGU

Length

16 nucleotides

Bulged bases

5VPP|1|RA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPP|1|RA|G|1042
5VPP|1|RA|C|1043
5VPP|1|RA|G|1044
5VPP|1|RA|A|1045
5VPP|1|RA|A|1046
5VPP|1|RA|G|1047
5VPP|1|RA|A|1048
5VPP|1|RA|C|1049
5VPP|1|RA|A|1050
5VPP|1|RA|G|1051
*
5VPP|1|RA|U|1108
5VPP|1|RA|C|1109
5VPP|1|RA|G|1110
5VPP|1|RA|A|1111
5VPP|1|RA|G|1112
5VPP|1|RA|U|1113

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6