3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CGU*AGUG
Length
7 nucleotides
Bulged bases
5VPP|1|RA|G|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_106 not in the Motif Atlas
Homologous match to IL_7A0S_041
Geometric discrepancy: 0.1329
The information below is about IL_7A0S_041
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_42997.3
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
20

Unit IDs

5VPP|1|RA|C|1196
5VPP|1|RA|G|1197
5VPP|1|RA|U|1198
*
5VPP|1|RA|A|1247
5VPP|1|RA|G|1248
5VPP|1|RA|U|1249
5VPP|1|RA|G|1250

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RF
50S ribosomal protein L4
Chain RP
50S ribosomal protein L15
Chain RU
50S ribosomal protein L20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.312 s
Application loaded.