IL_5VPP_112

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

5VPP|1|RA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_112 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.126

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5VPP|1|RA|G|1319
5VPP|1|RA|C|1320
5VPP|1|RA|A|1321
5VPP|1|RA|A|1322
5VPP|1|RA|U|1323
*
5VPP|1|RA|A|1331
5VPP|1|RA|G|1332
5VPP|1|RA|C|1333

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RW

50S ribosomal protein L22

Chain RX

50S ribosomal protein L23