IL_5VPP_135
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_135 not in the Motif Atlas
- Homologous match to IL_7A0S_069
- Geometric discrepancy: 0.1562
- The information below is about IL_7A0S_069
- Detailed Annotation
- UAA/GAN with extra pair
- Broad Annotation
- No text annotation
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5VPP|1|RA|U|1851
5VPP|1|RA|C|1852
5VPP|1|RA|A|1853
5VPP|1|RA|A|1854
5VPP|1|RA|G|1855
*
5VPP|1|RA|C|1887
5VPP|1|RA|G|1888
5VPP|1|RA|A|1889
5VPP|1|RA|A|1890
5VPP|1|RA|G|1891
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QV
- Transfer RNA; tRNA
- Chain R1
- 50S ribosomal protein L28
- Chain RD
- 50S ribosomal protein L2
Coloring options: