IL_5VPP_144

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_144 not in the Motif Atlas

Homologous match to IL_7RQB_083

Geometric discrepancy: 0.0936

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

5VPP|1|RA|C|2085
5VPP|1|RA|U|2086
5VPP|1|RA|G|2087
*
5VPP|1|RA|U|2232
5VPP|1|RA|U|2233
5VPP|1|RA|G|2234

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2