IL_5VPP_150

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_150 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.1777

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

5VPP|1|RA|C|2350
5VPP|1|RA|G|2351
5VPP|1|RA|A|2352
5VPP|1|RA|G|2353
*
5VPP|1|RA|C|2364
5VPP|1|RA|G|2365
5VPP|1|RA|A|2366
5VPP|1|RA|G|2367

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain R8

50S ribosomal protein L35

Chain RS

50S ribosomal protein L18