IL_5VPP_167

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5VPP|1|RA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_167 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1353

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5VPP|1|RA|G|2737
5VPP|1|RA|A|2738
5VPP|1|RA|U|2739
5VPP|1|RA|A|2740
5VPP|1|RA|A|2741
5VPP|1|RA|C|2742
*
5VPP|1|RA|G|2762
5VPP|1|RA|G|2763
5VPP|1|RA|A|2764
5VPP|1|RA|A|2765
5VPP|1|RA|G|2766
5VPP|1|RA|C|2767

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13