IL_5VPP_178
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUAAG*UAG
- Length
- 9 nucleotides
- Bulged bases
- 5VPP|1|XA|C|48, 5VPP|1|XA|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_178 not in the Motif Atlas
- Geometric match to IL_4LFB_003
- Geometric discrepancy: 0.1563
- The information below is about IL_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14177.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5VPP|1|XA|C|47
5VPP|1|XA|C|48
5VPP|1|XA|U|49
5VPP|1|XA|A|50
5VPP|1|XA|A|51
5VPP|1|XA|G|52
*
5VPP|1|XA|U|359
5VPP|1|XA|A|360
5VPP|1|XA|G|361
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XL
- 30S ribosomal protein S12
Coloring options: