3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CCUAAG*UAG
Length
9 nucleotides
Bulged bases
5VPP|1|XA|C|48, 5VPP|1|XA|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_178 not in the Motif Atlas
Geometric match to IL_4LFB_003
Geometric discrepancy: 0.1563
The information below is about IL_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_14177.2
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

5VPP|1|XA|C|47
5VPP|1|XA|C|48
5VPP|1|XA|U|49
5VPP|1|XA|A|50
5VPP|1|XA|A|51
5VPP|1|XA|G|52
*
5VPP|1|XA|U|359
5VPP|1|XA|A|360
5VPP|1|XA|G|361

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.376 s
Application loaded.