IL_5VPP_189

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

5VPP|1|XA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_189 not in the Motif Atlas

Homologous match to IL_5J7L_017

Geometric discrepancy: 0.1606

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5VPP|1|XA|U|367
5VPP|1|XA|U|368
5VPP|1|XA|C|369
*
5VPP|1|XA|G|392
5VPP|1|XA|A|393

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16