IL_5VPP_211

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5VPP|1|XA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_211 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1564

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5VPP|1|XA|G|925
5VPP|1|XA|G|926
5VPP|1|XA|G|927
*
5VPP|1|XA|U|1390
5VPP|1|XA|U|1391

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XX

messenger RNA