3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CUGCAU*AUGG
Length
10 nucleotides
Bulged bases
5VPP|1|XA|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_216 not in the Motif Atlas
Geometric match to IL_4V88_429
Geometric discrepancy: 0.3199
The information below is about IL_4V88_429
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

5VPP|1|XA|C|1051
5VPP|1|XA|U|1052
5VPP|1|XA|G|1053
5VPP|1|XA|C|1054
5VPP|1|XA|A|1055
5VPP|1|XA|U|1056
*
5VPP|1|XA|A|1204
5VPP|1|XA|U|1205
5VPP|1|XA|G|1206
5VPP|1|XA|G|1207

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XC
30S ribosomal protein S3
Chain XJ
30S ribosomal protein S10
Chain XN
30S ribosomal protein S14 type Z

Coloring options:


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