IL_5VPP_220

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

5VPP|1|XA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_220 not in the Motif Atlas

Homologous match to IL_4LFB_048

Geometric discrepancy: 0.3048

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

5VPP|1|XA|G|1124
5VPP|1|XA|U|1125
5VPP|1|XA|U|1126
5VPP|1|XA|G|1127
5VPP|1|XA|C|1128
*
5VPP|1|XA|G|1143
5VPP|1|XA|G|1144
5VPP|1|XA|C|1145
5VPP|1|XA|A|1146
5VPP|1|XA|C|1147
5VPP|1|XA|U|1148
5VPP|1|XA|C|1149

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10