IL_5VPP_222

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_222 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.1861

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5VPP|1|XA|C|1158
5VPP|1|XA|U|1159
5VPP|1|XA|G|1160
5VPP|1|XA|C|1161
*
5VPP|1|XA|G|1175
5VPP|1|XA|A|1176
5VPP|1|XA|G|1177
5VPP|1|XA|G|1178
5VPP|1|XA|A|1179
5VPP|1|XA|A|1180
5VPP|1|XA|G|1181

Current chains

Chain XA

16S rRNA

Nearby chains

Chain QJ

30S ribosomal protein S10

Chain XB

30S ribosomal protein S2

Chain XI

30S ribosomal protein S9