IL_5VPP_234

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_234 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.1538

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5VPP|1|XA|C|1431
5VPP|1|XA|G|1432
5VPP|1|XA|A|1433
5VPP|1|XA|A|1434
5VPP|1|XA|G|1435
*
5VPP|1|XA|C|1466
5VPP|1|XA|G|1467
5VPP|1|XA|A|1468
5VPP|1|XA|G|1469

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YT

50S ribosomal protein L19