IL_5VPP_236
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- 5VPP|1|XA|G|1440|||C
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_236 not in the Motif Atlas
- Homologous match to IL_6CZR_172
- Geometric discrepancy: 0.3098
- The information below is about IL_6CZR_172
- Detailed Annotation
- Isolated basepair with bulged bases
- Broad Annotation
- Isolated basepair with bulged bases
- Motif group
- IL_97255.3
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5VPP|1|XA|C|1440
5VPP|1|XA|G|1440|||A
5VPP|1|XA|G|1440|||B
5VPP|1|XA|G|1440|||C
5VPP|1|XA|A|1440|||D
5VPP|1|XA|G|1440|||E
*
5VPP|1|XA|C|1440|||N
5VPP|1|XA|A|1440|||O
5VPP|1|XA|G|1461
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XT
- 30S ribosomal protein S20
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YT
- 50S ribosomal protein L19
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