3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CGGGAG*CAG
Length
9 nucleotides
Bulged bases
5VPP|1|XA|G|1440|||C
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_236 not in the Motif Atlas
Homologous match to IL_6CZR_172
Geometric discrepancy: 0.3098
The information below is about IL_6CZR_172
Detailed Annotation
Isolated basepair with bulged bases
Broad Annotation
Isolated basepair with bulged bases
Motif group
IL_97255.3
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

5VPP|1|XA|C|1440
5VPP|1|XA|G|1440|||A
5VPP|1|XA|G|1440|||B
5VPP|1|XA|G|1440|||C
5VPP|1|XA|A|1440|||D
5VPP|1|XA|G|1440|||E
*
5VPP|1|XA|C|1440|||N
5VPP|1|XA|A|1440|||O
5VPP|1|XA|G|1461

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XT
30S ribosomal protein S20
Chain YA
Large subunit ribosomal RNA; LSU rRNA
Chain YT
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2102 s