IL_5VPP_240
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 5VPP|1|YA|G|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_240 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.1307
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
5VPP|1|YA|G|81
5VPP|1|YA|G|82
5VPP|1|YA|G|83
5VPP|1|YA|A|84
5VPP|1|YA|G|85
*
5VPP|1|YA|C|97
5VPP|1|YA|G|98
5VPP|1|YA|U|99
5VPP|1|YA|G|101
5VPP|1|YA|G|102
5VPP|1|YA|A|103
5VPP|1|YA|U|104
5VPP|1|YA|C|105
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y2
- 50S ribosomal protein L29
- Chain YY
- 50S ribosomal protein L24
Coloring options: