3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
5VPP|1|YA|G|801, 5VPP|1|YA|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_255 not in the Motif Atlas
Homologous match to IL_4WF9_021
Geometric discrepancy: 0.1084
The information below is about IL_4WF9_021
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

5VPP|1|YA|G|674
5VPP|1|YA|A|675
5VPP|1|YA|A|676
5VPP|1|YA|A|677
5VPP|1|YA|C|678
*
5VPP|1|YA|G|799
5VPP|1|YA|A|800
5VPP|1|YA|G|801
5VPP|1|YA|A|802
5VPP|1|YA|U|803
5VPP|1|YA|A|804
5VPP|1|YA|G|805
5VPP|1|YA|C|806

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15

Coloring options:


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