IL_5VPP_260

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

5VPP|1|YA|G|776, 5VPP|1|YA|A|788, 5VPP|1|YA|A|789, 5VPP|1|YA|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_260 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.0844

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

5VPP|1|YA|G|775
5VPP|1|YA|G|776
5VPP|1|YA|A|777
*
5VPP|1|YA|U|787
5VPP|1|YA|A|788
5VPP|1|YA|A|789
5VPP|1|YA|C|790
5VPP|1|YA|C|791

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YD

50S ribosomal protein L2

Chain YF

50S ribosomal protein L4

Chain YW

50S ribosomal protein L22