IL_5VPP_266

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_266 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.0983

The information below is about IL_7RQB_029

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

5VPP|1|YA|G|864
5VPP|1|YA|C|865
5VPP|1|YA|A|866
5VPP|1|YA|C|867
5VPP|1|YA|U|868
*
5VPP|1|YA|A|909
5VPP|1|YA|A|910
5VPP|1|YA|A|911
5VPP|1|YA|C|912

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25