IL_5VPP_269

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_269 not in the Motif Atlas

Geometric match to IL_4V88_388

Geometric discrepancy: 0.2362

The information below is about IL_4V88_388

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5VPP|1|YA|U|877
5VPP|1|YA|A|878
5VPP|1|YA|G|879
*
5VPP|1|YA|C|898
5VPP|1|YA|A|899

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25