IL_5VPP_305
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 5VPP|1|YA|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_305 not in the Motif Atlas
- Homologous match to IL_7RQB_068
- Geometric discrepancy: 0.128
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5VPP|1|YA|C|1686
5VPP|1|YA|G|1687
5VPP|1|YA|U|1688
5VPP|1|YA|A|1689
5VPP|1|YA|A|1690
5VPP|1|YA|C|1691
*
5VPP|1|YA|G|1696
5VPP|1|YA|G|1697
5VPP|1|YA|A|1698
5VPP|1|YA|G|1699
5VPP|1|YA|A|1700
5VPP|1|YA|A|1701
5VPP|1|YA|G|1702
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YD
- 50S ribosomal protein L2
Coloring options: