IL_5VPP_322
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- 5VPP|1|YA|C|2111, 5VPP|1|YA|G|2112, 5VPP|1|YA|G|2115, 5VPP|1|YA|U|2118, 5VPP|1|YA|A|2119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_322 not in the Motif Atlas
- Geometric match to IL_1KXK_003
- Geometric discrepancy: 0.2144
- The information below is about IL_1KXK_003
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
5VPP|1|YA|G|2110
5VPP|1|YA|C|2111
5VPP|1|YA|G|2112
5VPP|1|YA|U|2113
5VPP|1|YA|A|2114
5VPP|1|YA|G|2115
5VPP|1|YA|G|2116
5VPP|1|YA|A|2117
5VPP|1|YA|U|2118
5VPP|1|YA|A|2119
5VPP|1|YA|G|2120
*
5VPP|1|YA|C|2178
5VPP|1|YA|C|2179
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XV
- Transfer RNA; tRNA
Coloring options: