IL_5VPP_330

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_330 not in the Motif Atlas

Homologous match to IL_7A0S_085

Geometric discrepancy: 0.1686

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5VPP|1|YA|U|2457
5VPP|1|YA|G|2458
5VPP|1|YA|A|2459
*
5VPP|1|YA|U|2493
5VPP|1|YA|G|2494

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YQ

50S ribosomal protein L16