IL_5VPP_371

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGGC*GCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_371 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.2423

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

5VPP|1|XA|G|593
5VPP|1|XA|G|594
5VPP|1|XA|G|595
5VPP|1|XA|C|596
*
5VPP|1|XA|G|644
5VPP|1|XA|C|645
5VPP|1|XA|U|646

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XH

30S ribosomal protein S8

Chain XO

30S ribosomal protein S15

Chain XQ

30S ribosomal protein S17