IL_5VPP_373
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CGG*CCCG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_373 not in the Motif Atlas
- Geometric match to IL_7Y2B_003
- Geometric discrepancy: 0.3675
- The information below is about IL_7Y2B_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
5VPP|1|XA|C|656
5VPP|1|XA|G|657
5VPP|1|XA|G|658
*
5VPP|1|XA|C|747
5VPP|1|XA|C|748
5VPP|1|XA|C|749
5VPP|1|XA|G|750
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XH
- 30S ribosomal protein S8
- Chain XO
- 30S ribosomal protein S15
Coloring options: