3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GGGGAG*UCC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5VPP|1|XA|G|773
5VPP|1|XA|G|774
5VPP|1|XA|G|775
5VPP|1|XA|G|776
5VPP|1|XA|A|777
5VPP|1|XA|G|778
*
5VPP|1|XA|U|804
5VPP|1|XA|C|805
5VPP|1|XA|C|806

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XK
30S ribosomal protein S11
Chain XO
30S ribosomal protein S15
Chain YA
Large subunit ribosomal RNA; LSU rRNA
Chain YD
50S ribosomal protein L2

Coloring options:

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