IL_5VSU_003

3D structure

PDB id

5VSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5VSU|1|I|C|69
5VSU|1|I|U|70
*
5VSU|1|I|A|75
5VSU|1|I|A|76
5VSU|1|I|G|77

Current chains

Chain I

Saccharomyces cerevisiae strain T8 chromosome XII sequence

Nearby chains