IL_5VW1_002
3D structure
- PDB id
- 5VW1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GC*GUC
- Length
- 5 nucleotides
- Bulged bases
- 5VW1|1|C|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 94
Unit IDs
5VW1|1|C|G|54
5VW1|1|C|C|55
*
5VW1|1|C|G|58
5VW1|1|C|U|59
5VW1|1|C|C|60
Current chains
- Chain C
- sgRNA
Nearby chains
- Chain A
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: