3D structure

PDB id
5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGGG*CCGAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5W4K_108 not in the Motif Atlas
Homologous match to IL_7RQB_109
Geometric discrepancy: 0.0455
The information below is about IL_7RQB_109
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58764.3
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

5W4K|1|1A|G|2853
5W4K|1|1A|G|2854
5W4K|1|1A|G|2855
5W4K|1|1A|G|2856
*
5W4K|1|1A|C|2880
5W4K|1|1A|C|2881
5W4K|1|1A|G|2882
5W4K|1|1A|A|2883
5W4K|1|1A|C|2884

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S ribosomal protein L3
Chain 1R
50S ribosomal protein L17
Chain 1T
50S ribosomal protein L19

Coloring options:


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