3D structure

PDB id
5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UAG*CGAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5W4K_187 not in the Motif Atlas
Homologous match to IL_7RQB_013
Geometric discrepancy: 0.0607
The information below is about IL_7RQB_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69440.1
Basepair signature
cWW-L-R-cSH-cWW
Number of instances in this motif group
3

Unit IDs

5W4K|1|2A|U|293
5W4K|1|2A|A|294
5W4K|1|2A|G|295
*
5W4K|1|2A|C|343
5W4K|1|2A|G|344
5W4K|1|2A|A|345
5W4K|1|2A|A|346
5W4K|1|2A|A|347

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2Y
50S ribosomal protein L24

Coloring options:


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