IL_5W4K_255

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5W4K|1|2A|G|2124
5W4K|1|2A|G|2125
5W4K|1|2A|A|2126
5W4K|1|2A|G|2127
5W4K|1|2A|C|2128
5W4K|1|2A|C|2129
*
5W4K|1|2A|G|2159
5W4K|1|2A|G|2160
5W4K|1|2A|C|2161
5W4K|1|2A|G|2162
5W4K|1|2A|C|2163
5W4K|1|2A|C|2164
5W4K|1|2A|G|2165
5W4K|1|2A|G|2166
5W4K|1|2A|U|2167
5W4K|1|2A|G|2168
5W4K|1|2A|A|2169
5W4K|1|2A|A|2170
5W4K|1|2A|A|2171
5W4K|1|2A|U|2172
5W4K|1|2A|A|2173
5W4K|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA