IL_5W4K_287

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

5W4K|1|2a|C|48, 5W4K|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W4K_287 not in the Motif Atlas

Geometric match to IL_4LFB_003

Geometric discrepancy: 0.0659

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5W4K|1|2a|C|47
5W4K|1|2a|C|48
5W4K|1|2a|U|49
5W4K|1|2a|A|50
5W4K|1|2a|A|51
5W4K|1|2a|G|52
*
5W4K|1|2a|U|359
5W4K|1|2a|A|360
5W4K|1|2a|G|361

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12