IL_5W4K_355
3D structure
- PDB id
- 5W4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUGUAG*CGAAGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5W4K_355 not in the Motif Atlas
- Homologous match to IL_4WF9_031
- Geometric discrepancy: 0.2091
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5W4K|1|2A|C|856
5W4K|1|2A|C|857
5W4K|1|2A|U|858
5W4K|1|2A|G|859
5W4K|1|2A|U|860
5W4K|1|2A|A|861
5W4K|1|2A|G|862
*
5W4K|1|2A|C|915
5W4K|1|2A|G|916
5W4K|1|2A|A|917
5W4K|1|2A|A|918
5W4K|1|2A|G|919
5W4K|1|2A|G|920
5W4K|1|2A|G|921
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 23
- 50S ribosomal protein L30
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2Q
- 50S ribosomal protein L16
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