3D structure

PDB id
5WDT (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
5WDT|1|A|A|1127, 5WDT|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WDT_034 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0901
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

5WDT|1|A|G|1024
5WDT|1|A|G|1025
5WDT|1|A|G|1026
5WDT|1|A|A|1027
5WDT|1|A|A|1028
5WDT|1|A|A|1029
5WDT|1|A|C|1030
*
5WDT|1|A|G|1124
5WDT|1|A|G|1125
5WDT|1|A|A|1126
5WDT|1|A|A|1127
5WDT|1|A|G|1128
5WDT|1|A|A|1129
5WDT|1|A|U|1130
5WDT|1|A|G|1131
5WDT|1|A|U|1132
5WDT|1|A|A|1133
5WDT|1|A|A|1134
5WDT|1|A|C|1135
5WDT|1|A|G|1136
5WDT|1|A|G|1137
5WDT|1|A|G|1138
5WDT|1|A|G|1139
5WDT|1|A|C|1140

Current chains

Chain A
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain B
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16

Coloring options:


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