IL_5WDT_061

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5WDT|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_061 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1038

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5WDT|1|A|C|1686
5WDT|1|A|G|1687
5WDT|1|A|U|1688
5WDT|1|A|A|1689
5WDT|1|A|A|1690
5WDT|1|A|C|1691
*
5WDT|1|A|G|1696
5WDT|1|A|G|1697
5WDT|1|A|A|1698
5WDT|1|A|G|1699
5WDT|1|A|A|1700
5WDT|1|A|A|1701
5WDT|1|A|G|1702

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA