IL_5WDT_100

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUU*ACUGC

Length

8 nucleotides

Bulged bases

5WDT|1|A|C|2712, 5WDT|1|A|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_100 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.3345

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5WDT|1|A|G|2694
5WDT|1|A|U|2695
5WDT|1|A|U|2696
*
5WDT|1|A|A|2711
5WDT|1|A|C|2712
5WDT|1|A|U|2713
5WDT|1|A|G|2714
5WDT|1|A|C|2715

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19