IL_5WDT_119

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_119 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.0889

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

5WDT|1|a|C|132
5WDT|1|a|U|133
5WDT|1|a|G|134
5WDT|1|a|C|135
5WDT|1|a|C|136
*
5WDT|1|a|G|227
5WDT|1|a|A|228
5WDT|1|a|U|229
5WDT|1|a|G|230

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20