IL_5WDT_127

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_127 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1353

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5WDT|1|a|U|409
5WDT|1|a|G|410
5WDT|1|a|A|411
5WDT|1|a|A|412
5WDT|1|a|G|413
5WDT|1|a|A|414
5WDT|1|a|A|415
5WDT|1|a|G|416
*
5WDT|1|a|U|427
5WDT|1|a|G|428
5WDT|1|a|U|429
5WDT|1|a|A|430
5WDT|1|a|A|431
5WDT|1|a|A|432
5WDT|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4