IL_5WDT_129

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5WDT|1|a|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_129 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1819

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5WDT|1|a|G|446
5WDT|1|a|G|447
5WDT|1|a|A|448
5WDT|1|a|G|449
5WDT|1|a|G|450
*
5WDT|1|a|C|483
5WDT|1|a|G|484
5WDT|1|a|U|485
5WDT|1|a|U|486
5WDT|1|a|A|487
5WDT|1|a|C|488

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16