Loop IL_5WDT

3D structure

PDB id: 5WDT (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S ribosome-EF-Tu H84A complex with GppNHp
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: UGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACCACCCUUUA
Length: 62 nucleotides
Bulged bases: 5WDT|1|A|U|2111, 5WDT|1|A|U|2118, 5WDT|1|A|U|2132, 5WDT|1|A|U|2172
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5WDT|1|A|U|2106
5WDT|1|A|G|2107
5WDT|1|A|A|2108
5WDT|1|A|U|2109
5WDT|1|A|G|2110
5WDT|1|A|U|2111
5WDT|1|A|G|2112
5WDT|1|A|U|2113
5WDT|1|A|A|2114
5WDT|1|A|G|2115
5WDT|1|A|G|2116
5WDT|1|A|A|2117
5WDT|1|A|U|2118
5WDT|1|A|A|2119
5WDT|1|A|G|2120
5WDT|1|A|G|2121
5WDT|1|A|U|2122
5WDT|1|A|G|2123
5WDT|1|A|G|2124
5WDT|1|A|G|2125
5WDT|1|A|A|2126
5WDT|1|A|G|2127
5WDT|1|A|G|2128
5WDT|1|A|C|2129
5WDT|1|A|U|2130
5WDT|1|A|U|2131
5WDT|1|A|U|2132
5WDT|1|A|G|2133
5WDT|1|A|A|2134
5WDT|1|A|A|2135
5WDT|1|A|G|2136
5WDT|1|A|U|2137
*
5WDT|1|A|A|2154
5WDT|1|A|U|2155
5WDT|1|A|G|2156
5WDT|1|A|G|2157
5WDT|1|A|A|2158
5WDT|1|A|G|2159
5WDT|1|A|C|2160
5WDT|1|A|C|2161
5WDT|1|A|G|2162
5WDT|1|A|A|2163
5WDT|1|A|C|2164
5WDT|1|A|C|2165
5WDT|1|A|U|2166
5WDT|1|A|U|2167
5WDT|1|A|G|2168
5WDT|1|A|A|2169
5WDT|1|A|A|2170
5WDT|1|A|A|2171
5WDT|1|A|U|2172
5WDT|1|A|A|2173
5WDT|1|A|C|2174
5WDT|1|A|C|2175
5WDT|1|A|A|2176
5WDT|1|A|C|2177
5WDT|1|A|C|2178
5WDT|1|A|C|2179
5WDT|1|A|U|2180
5WDT|1|A|U|2181
5WDT|1|A|U|2182
5WDT|1|A|A|2183

Current chains

Chain A: 23S rRNA

Nearby chains

Chain k: 30S ribosomal protein S11
Chain w: Transfer RNA; tRNA

IL_5WDT_198