IL_5WE4_006

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_006 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.0592

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5WE4|1|A|G|188
5WE4|1|A|G|189
5WE4|1|A|A|190
5WE4|1|A|A|191
5WE4|1|A|C|192
5WE4|1|A|U|193
5WE4|1|A|G|194
*
5WE4|1|A|C|201
5WE4|1|A|U|202
5WE4|1|A|A|203
5WE4|1|A|A|204
5WE4|1|A|G|205
5WE4|1|A|U|206
5WE4|1|A|A|207
5WE4|1|A|C|208

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28