3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
5WE4|1|A|A|504, 5WE4|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WE4_009 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.0724
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

5WE4|1|A|G|481
5WE4|1|A|A|482
5WE4|1|A|A|483
5WE4|1|A|C|484
*
5WE4|1|A|G|496
5WE4|1|A|A|497
5WE4|1|A|G|498
5WE4|1|A|U|499
5WE4|1|A|G|500
5WE4|1|A|A|501
5WE4|1|A|A|502
5WE4|1|A|A|503
5WE4|1|A|A|504
5WE4|1|A|A|505
5WE4|1|A|G|506
5WE4|1|A|A|507
5WE4|1|A|A|508
5WE4|1|A|C|509

Current chains

Chain A
23S rRNA

Nearby chains

Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1352 s