3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WE4_010 not in the Motif Atlas
Homologous match to IL_5J7L_256
Geometric discrepancy: 0.0649
The information below is about IL_5J7L_256
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

5WE4|1|A|G|536
5WE4|1|A|G|537
5WE4|1|A|A|538
5WE4|1|A|G|539
*
5WE4|1|A|U|554
5WE4|1|A|G|555
5WE4|1|A|A|556
5WE4|1|A|C|557

Current chains

Chain A
23S rRNA

Nearby chains

Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20

Coloring options:


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