3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGGG*UUACC
Length
9 nucleotides
Bulged bases
5WE4|1|A|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WE4_028 not in the Motif Atlas
Geometric match to IL_4V88_429
Geometric discrepancy: 0.328
The information below is about IL_4V88_429
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

5WE4|1|A|G|879
5WE4|1|A|G|880
5WE4|1|A|G|881
5WE4|1|A|G|882
*
5WE4|1|A|U|894
5WE4|1|A|U|895
5WE4|1|A|A|896
5WE4|1|A|C|897
5WE4|1|A|C|898

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.0258 s