IL_5WE4_033

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5WE4|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_033 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1614

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5WE4|1|A|U|1018
5WE4|1|A|U|1019
5WE4|1|A|A|1020
5WE4|1|A|A|1021
5WE4|1|A|G|1022
5WE4|1|A|U|1023
5WE4|1|A|G|1024
*
5WE4|1|A|C|1140
5WE4|1|A|U|1141
5WE4|1|A|A|1142
5WE4|1|A|A|1143
5WE4|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13