IL_5WE4_064

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAGGC*GUGGAGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_064 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.3188

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5WE4|1|A|G|1719
5WE4|1|A|U|1720
5WE4|1|A|G|1721
5WE4|1|A|A|1722
5WE4|1|A|G|1723
5WE4|1|A|G|1724
5WE4|1|A|C|1725
*
5WE4|1|A|G|1735
5WE4|1|A|U|1736
5WE4|1|A|G|1737
5WE4|1|A|G|1738
5WE4|1|A|A|1739
5WE4|1|A|G|1740
5WE4|1|A|C|1741

Current chains

Chain A

23S rRNA

Nearby chains