IL_5WE4_068

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5WE4|1|A|A|1899, 5WE4|1|A|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_068 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.0847

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

5WE4|1|A|U|1841
5WE4|1|A|G|1842
*
5WE4|1|A|U|1898
5WE4|1|A|A|1899
5WE4|1|A|A|1900
5WE4|1|A|A|1901

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA